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BI132 - Environmental Science 2

Help with finding material on northwest salmon

Predation

Adams, J., Kaplan, I. C., Chasco, B., Marshall, K. N., Acevedo-Gutiérrez, A., & Ward, E. J. (2016). 
      A century of Chinook salmon consumption by marine mammal predators in the Northeast Pacific 
      Ocean. Ecological Informatics, 34, 44-51. doi: 10.1016/j.ecoinf.2016.04.010
Adrean, L. J., Roby, D. D., Lyons, D. E., Collis, K., & Evans, A. F. (2012). 
      Potential effects of management on Caspian tern Hydroprogne caspia predation 
      on juvenile salmonids at a colony in San Francisco Bay, California. 
      Transactions of the American Fisheries Society, 141(6), 1682-1696.
      doi: 10.1080/00028487.2012.713886

Adrean, L.J. (2011). Caspian tern (Hydroprogne caspia) foraging 
      ecology and predation on juvenile salmonids in San Francisco Bay, 
      California. (Master's thesis). Retrieved from 
      http://scholarsarchive.library.oregonstate.edu/
      xmlui/bitstream/handle/1957/22008/AdreanLindsayJ2011.pdf?sequence=1

Anderson, C.D., Roby, D.D., & Collis, K. (2004). Foraging patterns of male and 
      female double-crested cormorants nesting in the Columbia River estuary. 
      Canadian Journal of Zoology 82, 541-554.  doi:10.1139/Z04-019

Anderson, S.K., Roby, D.D., Lyons, D.E. & Collis, K. (2005). Factors 
      affecting chick provisioning by Caspian terns nesting in the 
      Columbia River Estuary. Waterbirds 28, 95-105. Retrieved 
      January 16, 2013, from http://people.oregonstate.edu/~lyonsd/
      andersonetal2005.pdf

Antolos, M., Roby, D.D. & Lyons, D.E. (2005). Caspian tern predation 
      on juvenile salmonids in the mid-Columbia River. Transactions of 
      the American Fisheries Society 134, 466-480.  Retrieved January 16,
      2013, from http://people.oregonstate.edu/~lyonsd/antolosetal2005.pdf

Barnas, K.A., Rub, A.M.W., & Sanderson, B.L. (2009). Nonindigenous 
      species of the Pacific Northwest: an overlooked risk to 
      endangered salmon? BioScience, 59, 245-256. doi:10.1525/
      bio.2009.59.3.9

Bayer, R. (2000). Cormorant harrassment to protect juvenile salmonids in Tillamook
      County, Oregon.  Studies in Oregon Ornithology No. 9. Newport, OR: Gahmken. 
      Retrieved October 11, 2002, from 
      http://www.oregonvos.net/~rbayer/salmon/s9a.htm

Bayer, R.D. (2003). Review: Bird Predation of juvenile salmonids and management 
      of birds near 14 Columbia Basin dams. Yaquina Studies in Natural History 
      No. 10. Newport, OR: Gahmken. Retrieved January 2, 2013, from 
      http://scholarsarchive.library.oregonstate.edu/xmlui/handle/1957/8430
Browne, P., Laake, J.L. & DeLong, R.L. (2002). Improving pinniped diet analyses 
      through identification of multiple skeletal structures in fecal samples. Fishery 
      Bulletin 100, 423-433. Retrieved May 28, 2004, from
      http://fishbull.noaa.gov/1003/04browne.pdf
Carey, M. P., Sanderson, B. L., Barnas, K. A., & Olden, J. D. (2012). Native 
      invaders-challenges for science, management, policy, and society. Frontiers 
      in Ecology and the Environment, 10(7), 373-381. doi:10.1890/110060
Caudill, C. C., Clabough, T. S., Jepson, M. A., Keefer, M. L., Lee, S. R.,
      Naughton, G. P., & Peery, C. A. (2011). Influence of pinniped-caused 
      injuries on the survival of adult Chinook salmon (Oncorhynchus 
      tshawytscha) and steelhead trout (Oncorhynchus mykiss) in the 
      Columbia River basin. Canadian Journal of Fisheries and Aquatic 
      Sciences, 68, 1615-1624. doi:10.1139/F2011-064
Chasco, B., Kaplan, I. C., Thomas, A., Acevedo-Gutierrez, A., Noren, D., Ford, M. J., ...
      Ward, E. J. (2017). Estimates of Chinook salmon consumption in Washington State 
       inland waters by four marine mammal predators from 1970 to 2015. Canadian Journal 
      of Fisheries and Aquatic Sciences, 74(8), 1173-1194. doi:10.1139/cjfas-2016-0203-4
Collis, K., Roby, D.D., Craig, D.P., Adamany, S., Adkins, J.Y., & Lyons, D.E. (2002). 
      Colony size and diet composition of piscivorous waterbirds on the lower
      Columbia River: Implications for losses of juvenile salmonids to avian
      predation. Transactions of the American Fisheries Society 131, 537-550.
      Retrieved May 2, 2005, from http://oregonstate.edu/robylab/collisetal2002.pdf.

Collis, K., Roby, D.D., Craig, D.P., Ryan, B.A., & Ledgerwood, R.D. (2001). 
      Colonial waterbird predation on juvenile salmonids tagged with passive 
      integrated transponders in the Columbia River estuary: Vulnerability 
      of different salmonid species, stocks, and rearing types. 
      Transactions of the American Fisheries Society 130,385-396. Retrieved 
      May 2, 2005, from http://oregonstate.edu/robylab/collisetal2001.pdf

Collis, K., Roby, D. D., Larson, K. W., Adrean, L. J., Nelson, S. K., Evans, A. F., 
      ... & Patterson, A. (2012). Trends in Caspian tern nesting and diet in San 
      Francisco Bay: conservation implications for terns and salmonids. Waterbirds, 
      35(1), 25-34. Retrieved October 24, 2013, from http://www.waterbirds.org/journal

Emmett, R.L. (1996). Estuarine survival of salmonids: the importance of 
      interspecific and intraspecific predation and competition. In R.L. Emmett 
      and M. Schiewe (Eds.) Estuarine and ocean survival of northeastern Pacific 
      salmon, proceedings of the workshop March 20-22, 1996, Newport, Oregon. 
      Seattle, WA: Northwest Fisheries Science Center.  Retrieved January 12, 2004, from 
      http://www.nwfsc.noaa.gov/publications/techmemos/tm29/papers/emmett.htm

Emmett, R.L., Bentley, P.J. & Krutzikowsky, G.K. (2001) Ecology of marine predatory 
      and prey fishes off the Columbia River, 1998 and 1999 (NOAA Technical
      Memorandum NMFS-NWFSC-51). U.S. Department of Commerce.  Retrieved January
      12, 2004 from http://www.nwfsc.noaa.gov/publications/techmemos/tm51/tm51.html

Emmett, R.L., & Krutzikowsky, G.K. (2008). Nocturnal feeding of Pacific 
      hake and jack mackerel off the mouth of the Columbia River, 1998-2004: 
      Implications for juvenile salmon predation. Transactions of the 
      American Fisheries Society, 137, 657-676. doi:10.1577/T06-058.

Evans, A. F., Hostetter, N. J., Roby, D. D., Collis, K., Lyons, D. E., Sandford, 
      B. P., ... & Sebring, S. (2012). Systemwide evaluation of avian predation on 
      juvenile salmonids from the Columbia River based on recoveries of passive 
      integrated transponder tags. Transactions of the American Fisheries Society, 
      141(4), 975-989.

Evans, A. F., Payton, Q., Cramer, B. M., Collis, K., Hostetter, N. J., 
      Roby, D. D., & Dotson, C. (2019). Cumulative Effects of Avian Predation 
      on Upper Columbia River Steelhead. Transactions of the American Fisheries 
      Society, 148(5), 896-913.
Evans, A.F., Roby, D.D., Collis, K., Cramer, B.M. Sheggeby,Andrean, L.J. 
      ... Lyons, D.E. (2011). Recovery of coded wire tags at a Caspian Tern 
      colony in San Francisco Bay: A technique to evaluate impacts of avian 
      predation on juvenile salmonids. North American Journal of Fisheries 
      Management 31, 79–87. doi: : 10.1080/02755947.2011.562429

Ford, J. K., & Ellis, G. M. (2006). Selective foraging by fish-eating killer 
      whales Orcinus orca in British Columbia. Marine Ecology Progress Series, 
      316, 185-199. Retrieved October 25, 2013, from http://www.int-res.com/
      journals/meps/meps-home/
Ford, J. K. B., Ellis, G. M., Barrett-Lennard, L., Morton, A. B., et al. (1998). 
      Dietary specialization in two sympatric populations of killer whales (Orcinus orca) 
      in coastal British Columbia and adjacent waters. Canadian Journal of Zoology, 
      76(8), 1456-1471. doi:10.1139/z98-089 
Foster, E.A., Frank, D.W., Morrell, L.J., Balcomb, K.C., Parson, 
      K.M., van Ginneken, A., & Croft, D.P. (2012). Social network correlates 
      of food availability in an endangered population of killer whales, 
      Orcinus orca. Animal Behaviour, 83, 731–736. 
      doi:10.1016/j.anbehav.2011.12.021

Hanson, M., Baird, R. W., Ford, J. K., Hempelmann-Halos, J., Van Doornik, 
      D. M., Candy, J. R., ... & Ford, M. J. (2010). Species and stock 
      identification of prey consumed by endangered southern resident killer 
      whales in their summer range. Endangered Species Research, 11, 69-82.
      doi: 10.3354/esr00263

Independent Multidisciplinary Science Team. (1998). Pinniped and and seabird 
      predation: implications for recovery of threatened stocks of salmonids in 
      Oregon under the  Oregon Plan for Salmon and Watersheds (Technical report 
      1998-2 to the Oregon Plan for Salmon and Watersheds). Salem, OR: Governor's 
      Natural Resources Office. 29 p. Retrieved February 25, 2003, from 
      http://www.fsl.orst.edu/imst/reports/1998-2.pdf

Kuehne, L.M. & Olden, J.D. (2012). Prey naivety in the behavioural 
      responses of juvenile Chinook salmon (Oncorhynchus tshawytscha) to an 
      invasive predator. Freshwater Biology, 57, 1126–1137. doi:10.1111/
      j.1365-2427.2012.02776.x

Laake, J.L., Browne,  P., DeLong, R.L., Huber,  H.R. (2002). Pinniped diet 
      composition: a comparison of estimation models. Fishery Bulletin 100, 
      434-447. Retrieved Dec. 7, 2018 from Gale Academic OneFile

Lance, M. M., Chang, W. Y., Jeffries, S. J., Pearson, S. F., & Acevedo-Gutiérrez, A. 
      (2012). Harbor seal diet in northern Puget Sound: implications for the recovery of 
      depressed fish stocks.  Marine Ecology Progress Series, 464, 257-271. 
      doi: 10.3354/meps09880

Lyons, D.E., & Roby, D.D. (2007). Foraging Patterns of Caspian terns and 
      double-crested cormorants in the Columbia River estuary. Northwest 
      Science, 81, 91.103. Retrieved January 16, 2013, from 
      http://www.northwestscience.org/Default.aspx?pageId=937324

McMichael, G. A., Hanson, A. C., Harnish, R. A., & Trott, D. M. (2013). Juvenile 
      salmonid migratory behavior at the mouth of the Columbia River and within the 
      plume. Animal Biotelemetry, 1(1), 1-16. Retrieved October 24, 2013, from 
      http://www.animalbiotelemetry.com

Miller, K.M, Teffer, A., Tucker, S., Li, S., Schulze, A.D Trudel, M., ... Hinch, S.G. (2014). 
      Infectious disease, shifting climates, and opportunistic predators: cumulative factors 
      potentially impacting wild salmon declines. Evolutionary Applications 7, 812-855. 
      doi: 10.1111/eva.12164

Moore, M., Berejikian, B. A., & Tezak, E. P. (2013). A floating bridge disrupts 
      seaward migration and increases mortality of steelhead smolts in Hood Canal, 
      Washington State. PloS one, 8, e73427. doi:10.1371/journal.pone.0073427

National Marine Fisheries Service. (1997, March). Investigation of scientific 
      information on the impacts of California sea lions and Pacific harbor seals on 
      salmonids and on the  coastal ecosystems of Washington, Oregon, and California
      (NOAA Technical Memorandum NMFS-NWFSC-28). Seattle: Author. Retrieved May 28, 2004,
      from http://www.nwfsc.noaa.gov/publications/techmemos/tm28/tm28.htm

National Marine Fisheries Service, Northwest Region. (2006, October). Designation 
      of critical habitat for southern resident killer whales: Biological report. 
      Seattle, WA: The service. Retrieved October 10, 2013, from 
      http://www.nwr.noaa.gov/publications/protected_species/marine_mammals/cetaceans/
      killer_whales/esa_status/srkw-ch-bio-rpt.pdf

Nelson, B. W., Walters, C. J., Trites, A. W., & McAllister, M. K. (2018). Wild Chinook salmon 
      productivity is negatively related to seal density and not related to hatchery releases in the 
      Pacific Northwest. Canadian Journal of Fisheries and Aquatic Sciences, (999), 1-16.
      doi:10.1139/cjfas-2017-0481
Orr, A.J., Banks, A.S., Mellman, S., Huber, H.R. & DeLong, R. (2004). Examination 
      of the foraging habits of Pacific harbor seal (Phoca vitulina richardsi) to
      describe their use of the Umpqua River, Oregon, and their predation on 
      salmonids. Fishery Bulletin 102, 108-117. Retrieved May 28, 2004, from 
      http://fishbull.noaa.gov/1021/orr.pdf

      Also available through Academic OneFile

Osterback, A.M. (2014). Subsidized predators and imperiled prey: the impact 
      of avian predators on salmonids. (Unpublished doctoral dissertation). 
      Retrieved from http://escholarship.org/uc/item/0w70j720
Patterson, A.,  (2012). Breeding and foraging ecology of Caspian terns nesting 
      on artificial islands in the Upper Klamath Basin (Unpublished master's 
      thesis). Oregon State University, Corvallis, OR.
Petersen, J.H. (2002).  Compensatory feeding following a predator removal program: 
      detection and mechanisms, Report to Bonneville Power Administration. Portland: 
      U.S. Geological Survey Western Fisheries Research Center Columbia River 
      Research Laboratory (BPA Report DOE/BP-00003395-1). doi:10.2172/797030
Phillips, E. M., Horne, J. K., & Zamon, J. E. (2017). Predator–prey interactions 
      influenced by a dynamic river plume. Canadian Journal of Fisheries and Aquatic 
      Sciences, 74(9), 1375-1390.
Purcell, M., Mackey, G., LaHood, E., Huber, H. & Park, L. (2004). Molecular methods 
      for the genetic identification of salmonid prey from Pacific harbor seal 
      (Phoca vitulina richardsi) scat. Fishery Bulletin 102, 213-220. Retrieved 
      May 28, 2003, from http://fishbull.noaa.gov/1021/purcell.pdf.
Roby, D.D., Collis, K., & Lyons, D.E. (2003). Conservation and Management 
      for Fish-Eating Birds and Endangered Salmon. In C.J. Ralph & T.D. Rich 
      (Eds.) Bird conservation implementation and integration in the Americas: 
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Roby, D.D., Collis, K., Lyons, D.E., Craig, D.P., Adkins, J., Myers, A.M., et al. 
      (2002).Effects of colony relocation on diet  and productivity of Caspian 
      terns. Journal of Wildlife Management 66, 662-673. Retrieved May 2, 2005,
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Roby, D.D., Lyons, D.E., Craig, D.P., Collis, K., & Visser, G.H. (2003). Quantifying 
      the effects of predators on endangered species using a bioenergetics 
      approach: Caspian terns and juvenile salmonids in the Columbia River estuary. 
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      in a tributary stream. The American Midland Naturalist,       
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      Columbia River and Estuary, 1992-1998: Evidence for delayed mortality?. 
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      R. H., & Bayley, K. N. (2019). Evaluation of pinniped predation on adult salmonids 
      and other fish in the Bonneville Dam tailrace: 2017. US Army Corps of Engineers, 
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      D. M., Teel, D. J., ... & Huff, D. D. (2019). Changes in adult Chinook salmon 
      (Oncorhynchus tshawytscha) survival within the lower Columbia River amid increasing 
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      Ecosystem‐based management of predator–prey relationships: 
      piscivorous birds and salmonids. Ecological Applications, 18(3), 
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       predators and prey: Estimating killer whale prey requirements 
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      jubatus) off Alaska: How much prey do they require?. Fishery Bulletin, 
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      K.A. (2007). Assessment of harbor seal predation on adult salmonids 
      in a Pacific Northwest estuary. Ecological Applications, 17, 
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