Skip to Main Content

BI132 - Environmental Science 2

Help with finding material on northwest salmon

Population Genetics

Beacham, T.D., et al. (2003, April). Evaluation and application of microsatellites 
      for population identification of Fraser River chinook salmon (Oncorhynchus 
      tshawytscha). Fishery Bulletin 101, p. 243-259. Retrieved December 10, 2020, 
      from https://spo.nmfs.noaa.gov/sites/default/files/pdf-content
      /2003/1012/beacha2.pdf


Beacham, T.D., et al. (2003, April). The geographic basis for population structure
      in Fraser River chinook salmon (Oncorhynchus tshawytscha). Fishery Bulletin 
      101, p. 229-242. Retrieved December 10, 2020, from 
      https://spo.nmfs.noaa.gov/sites/default/files/pdf-content/2003/1012/beacha.pdf


Brunelli, J.P., Wertzler, K.J., Sundin, K., & Thorgaard, G.H. (2008, September).
      Dividing population genetic distance data with the software 
       Partitioning Optimization with Restricted Growth Strings (PORGS): an application 
       for Chinook salmon (Oncorhynchus tshawytscha), Vancouver Island, British 
       Columbia.  Fishery Bulletin, 107(1), 45-66. 


Ford, M.J., Murdoch, A., & Hughes, M. (2015). Using parentage analysis 
      to estimate rates of straying and homing in Chinook salmon (Oncorhynchus 
      tshawytscha). Molecular Ecology, 24, 1109-1121. doi: 10.1111/mec.13091


Geßner, C., Johnson, S. L., Fisher, P., Clarke, S., Rutherford, K., Symonds, J., & Gemmell, 
      N. J. (2017). Sexual selection for genetic compatibility: the role of the major 
      histocompatibility complex on cryptic female choice in Chinook salmon 
      (Oncorhynchus tshawytscha). Heredity, 118(5), 442. doi:10.1038
      /hdy.2016.116
Gharrett, Anthony J., Gray, Andrew K., &Brykov, Vladimir (2001).  
      Phylogeographic analysis of mitochondrial DNA variation in Alaskan coho 
      salmon (Oncorhynchus kisutch). Fishery Bulletin 99, 528-544. Retrieved 
      July 10, 2002, from http://fishbull.noaa.gov/994/gha.pdf
Hard, J. (2010). Maternal effects on egg quality in hatchery, wild, and 
      farmed Chinook salmon (Oncorhynchus tshawytscha).  (Unpublished master's 
      thesis). University of Windsor, Windsor, Ontario.  Retrieved from Scholarship at 
      UWindsor Electronic Theses and Dissertations. (5249)

Heath, D.D., Heath, J.W., Bryden, C.A., Johnson, R.M., Fox, C.W. (2003, March 
      14). Population structure and divergence using microsatellite and 
      gene locus markers in Chinook salmon (Oncorhynchus tshawytscha) 
      populations. Canadian Journal of Fisheries & Aquatic Sciences, 63, 1370-1383. 
      doi:10.1139/f06-044
Hedrick, P.W. (2001). Invasion of transgenes from salmon or other genetically 
      modified organisms into natural populations. Canadian Journal of Fisheries 
      and Aquatic Sciences, 58, 841-844. Retrieved from 
      http://science.kennesaw.edu/~jdirnber/Bio2108/Lecture/LecEvolution/TransgeneSalm.pdf
      See alsoErratum
Houde, A., Schulze, A., Kaukinen, K., Strohm, J., Patterson, D., Beacham, 
      T., . . . Miller, K. (2019). Increased mitochondrial 
      DNA diversity in ancient Columbia River basin Chinook salmon Oncorhynchus 
      tshawytscha. PloS One, 13(1), e0190059. doi:10.1371/journal.pone.0190059
Kim, T.J., Parker, K.M., and Hedrick, P.W. (1999). Identification and characterization of miRNAs and 
      lncRNAs of coho salmon (Oncorhynchus kisutch) in normal immune 
      organs. Genomics, 31 July 2019. doi: 10.1016/j.ygeno.2019.07.015
Nagler, J.J., Bouma, J., Thorgaard, G.H., & Dauble, D.D. (2001). High 
      incidence of a male-specific genetic marker in phenotypic female chinook 
      salmon from the Columbia River.. Environmental Health Perspectives 109,  
      67-69. Retrieved January 27, 2010, from Academic OneFile
Nelson, H., Isaak, D., Thurow, R., Dunham, J. & Rieman, B. (2006, June). Population structure of Fraser River chinook salmon 
      (Oncorhynchus tshawytscha</em>): an analysis using microsatellite 
      DNA markers Fishery Bulletin 99, 94-107.  
      Retrieved December 10, 2020, from https://spo.nmfs.noaa.gov
      /sites/default/files/pdf-content/2001/991/Nelson.pdf
Oke, K., & Hendry, A. (2019). Genetic insights into the past, present, 
      and future of a keystone species. Proceedings of the National Academy 
      of Sciences of the United States of America, 116(2), 344-346. doi:
      10.1073/pnas.1819789116
O'Malley, K.G., Jacobson, D.P., Kurth, R., Dill, A.J., & Banks, M.A. (2013). 
      Concentration-response relationships and temporal patterns in hepatic gene 
      expression of Chinook salmon (Oncorhynchus tshawytscha) exposed to 
      sewage. Comparative Biochemistry and Physiology Part D: Genomics and 
      Proteomics 8, 32-44.  doi: 10.1016/j.cbd.2012.10.002

Shaklee, J.B., Beacham, T.D., Seeb, L., & White, B.A. (1999). Genetic  variation of fecundity and egg size in anadromous pink salmon 
      Oncorhynchus gorbuscha Walbaum. Alaska Fishery Research Bulletin 7, 44-50. 
      Retrieved January 14, 2013, from 
      http://www.adfg.alaska.gov/static/home/library/pdfs/afrb/smokerv7.pdf

Teel, D.J., Van Doornik, D.M., & Kuligowski, D.R. (2003). Genetic analysis of 
      juvenile coho salmon (Oncorhynchus kisutch) off Oregon and Washington reveals 
      few Columbia River wild fish. Fishery Bulletin 101, 640-652.  Retrieved 
      December 10, 2020, from https://spo.nmfs.noaa.gov/sites
      /default/files/pdf-content/2003/1013/teelfi.pdf
Thompson, T. Q., Bellinger, M. R., O’Rourke, S. M., Prince, D. J., Stevenson, A. E., 
      Rodrigues, A. T., ... & Banks, M. A. (2019). Insights, from genetic analyses, into stock-specific distribution of 
      juvenile steelhead (Oncorhynchus mykiss) from the Columbia River during 
      early marine migration. Fishery Bulletin, 117(1-2), 97-106. doi:
      10.7755/FB.117.1-2.11
von Schalburg, K.R., Yazawa, R., de Boer, J., Lubieniecki, K.P., Goh, B., 
     Straub, C.A., Beetz-Sargent, &hellip; Koop, B.F. (2008, November 3). Isolation, 
     characterization and comparison of Atlantic and Chinook salmon growth hormone 
     1 and 2. BMC Genomics, 9, 522.  doi:10.1186/1471-2164-9-522

Waples, R.S. (2002). Effective size of fluctuating salmon populations. 
      Genetics 161, 783-791. Retrieved from www.ncbi.nlm.nih.gov
      /pmc/articles/PMC1462121/

Walter, R.P., Aykanat, T., Kelly, D.W., Shrimpton, J.M., & Heath, D.D. 
      (2009, February). Gene flow increases temporal stability of
      Chinook salmon (Oncorhynchus tshawytscha populations 
      in the Upper Fraser River, British Columbia, Canada. 
      Canadian Journal of Fisheries & Aquatic Science, 66
      167-176. https://doi.org/10.1139/F08-201